Lifeboat Foundation

The findings are published in Cancer Cell in an article titled, “Evolution of immune and stromal cell states and ecotypes during gastric adenocarcinoma progression.”

“Understanding tumor microenvironment (TME) reprogramming in gastric adenocarcinoma (GAC) progression may uncover novel therapeutic targets,” wrote the researchers. “Here, we performed single-cell profiling of precancerous lesions, localized and metastatic GACs, identifying alterations in TME cell states and compositions as GAC progresses. Abundant IgA+ plasma cells exist in the premalignant microenvironment, whereas immunosuppressive myeloid and stromal subsets dominate late-stage GACs.”

“Gastric adenocarcinoma exhibits a high degree of heterogeneity with respect to both its phenotypes and molecular characteristics, but research around it has lagged behind other cancer types,” explained Linghua Wang, MD, PhD, associate professor of genomic medicine. “Most studies have concentrated on tumor cells and largely overlooked the immune and stromal cells within the tumor microenvironment, which are very dynamic and play critical roles in cancer progression. This study represents the largest single-cell RNA sequencing cohort of gastric adenocarcinoma to date and brings important new insights into how these cell populations impact disease progression.”

A team of molecular and cellular biologists from several institutions in Taiwan and one in the Philippines has identified some of the mechanical waves involved in the regeneration of amputated tailfins in zebrafish. In their study, reported in the journal Nature Physics, the group studied zebrafish regrowth after their tailfins were removed.

Prior research has shown that many animals have the ability to regrow body parts (mostly appendages) when they are lost, typically after incidents of fighting or hunting. Prior research has also shown that for most such creatures, the amount of regrowth is proportional to the amount lost. The generation of mechanical waves are known to play a role in controlling epithelial cell expansion, the means by which new tissues are generated.

Continue reading “Biologists identify mechanical waves involved in limb regeneration in zebrafish” »

Advanced neuroprosthetics are here, and they could hook our brains into the Internet of Things.

Caused by genes, disease, or medicine color blindness is diagnosed using the Ishiara color test. Learn more about about the gadgets and habits that some people with color deficiency use to live with it and to explore the prospects of various treatments.

Wouldn’t it be nice to get a flu shot that could last for years? Researchers are actively working on a so-called “universal” flu vaccine.

Researchers at Tel Aviv University (TAU) say they have identified two key components of the body’s immune response to severe infectious disease, potentially paving the way for personalized and more effective treatments in the field of infectious diseases.

An infectious disease is caused by a microorganism such as a bacterium or a virus entering the body and causing damage to the cells. These cells can also be damaged by the immune system fighting the infection, such as in the case of inflammation.

The body’s reaction to infection has previously been viewed as a monolithic unit, but now the TAU researchers have been able to locate two main markers in the blood that are triggered by infection.

When asked how this model can cover such a broad scale, Xie says, that it “is rooted in the integration of mechanistic modeling and ML statistical methods, which allows the model to provide a more comprehensive and nuanced understanding of various aspects of RNA and related processes, while quantifying uncertainties due to limited knowledge.”

For example, she explains that, “The mechanistic aspect of the model captures intricate physical and chemical properties at the atomic level, which supports a deep understanding of the underlying biological processes, and the machine-learning element can effectively capture patterns in complex datasets—such as molecular simulations and single-molecule fluorescence microscopy time-course data—and learn relationships that might not be explicitly described in existing mechanistic models.”

In addition to helping scientists better understand the fundamental biology of RNA, the Northeastern team’s hybrid model promises many commercial benefits in the production of monoclonal antibodies, cell and gene therapies, and mRNA vaccines. As Xie says, “It can advance the knowledge of RNA manufacturing mechanisms and guide simultaneous design/control strategies at different levels, such as RNA sequence selection and specifications of critical quality attributes, with less experiments.”

A team of scientists led by Nanyang Technological University, Singapore (NTU Singapore) has found that an existing cancer drug could be repurposed to target a subset of cancers that currently lack targeted treatment options and are often associated with poor outcomes.

This subset of cancers makes up 15% of all cancers and is especially prevalent in aggressive tumors such as osteosarcoma (bone tumor) and glioblastoma (brain tumor).

These cancerous cells stay “immortal” using a mechanism called the alternative lengthening of telomeres (ALT), but the team has demonstrated that ponatinib, a cancer drug approved by the US Food and Drug Administration, blocks key steps in the ALT mechanism that leads it to fail.

Stem cells are valuable to a wide range of biomedical and pharmaceutical research applications because of their high self-renewal and differentiation potential. But working with human stem cells is not easy. For starters, they are high-maintenance and expensive to culture. They also need to be constantly monitored, to ensure they remain pluripotent, viable and homogeneous. In order to set yourself up for success, firstly, you need a precise and gentle way to isolate stem cells.

Challenges of stem cell isolation

Stem cells are cultured in the lab using specialized “recipes” that vary depending on the application. For example, adult cells can be reprogrammed into pluripotent stem cells (iPSCs) by adding cofactors like Oct3/4, KLF4, Sox2 and c-Myc1. Along the way, stem cells are isolated for routine testing to make sure they have the expected features.